Texmacs gets confused if in the bib file there are "comments"...
The first reference does not get recognized. In one of the documents,
I even have [1] to refer to one article and [1] refer to another...
It all got fixed once I removed the "comments" in the bib file.
I used TeXmacs 1.0.7.13 in Ubuntu Maverick Meerkat.
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